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my theory
For me the discussion of a Matrix within a Matrix, although interesting is not the most relevant. The final part of the trilogy could in theory have been written either way, some questions would need to be cleared up more than others, but it could be done. Personally I quite like the neatness of the previous versions being levels of the Matrix on top of each other. But either way this does not effect what I consider the main principle of the film - Neo's journey.
i dont like the "Neo is a program notion". I agree that by analysing the script you can draw some conlcusions toward this, however, it is not correct. Neo is Human - get used to it!
For me the film is a metaphor for the "upward" journey of wisdom/knowledge/hope/determination in Neo's mind, it would be a great shame if the fantastic representations of this metaphor in films 1 & 2 are undermined by a pointless twist in the 3rd film.
I will eat my hat if neo is a progam! (And its a big hat!)
If in reloaded he is able to strike a deal then he has defeated the system - in one way the machines are not the enemy - its the system created by them that is the enemy.
This is analagous to our real world - we have a system which we created, and it isnt very fair to all human beings - many people fight against this system - to beat this system would not mean slaughtering every human being on earth - to beat the system would be to remove system with wisdom, to strike a new deal between everybody.
I also dont think that it is necessary to try and litterally explain things like how Neo sees Trinity falling before it happens:
As we already know "the one" has the ability to control the Matrix as he see's fit. In other words - as Neo's Wisdom grows he has more and more ability to control his destiny i.e. the ability to "shape" his future.
Couple this with Morpheus's quote in the first movie:
"there is a difference between knowing the path and walking the path"
And then you can intepret images like Trinity as Neo "knowing the path". This image is a problem for Neo, he doesnt understand it, and it manifests itself as a nightmare.
Now take the oracles quote in reloaded:
"we can never see passed the choices we do not understand".
Up until the point when Neo actually catches Trinity he did not understand this image - he just knew this formed a moment in his "path" perhaps you could describe it as a metaphorical milestone.
consider the Oracles comment: "you are looking at the world without time now neo"
Now, if you discount time as being the primary driver on a metaphorical "path". Then its not that he understands the image after he has caught her but the exact moment he catches her represents neo understanding how to walk his "path". the milestone in time and understanding are co-incendent. (we could also talk here about "reason" there is a reason for this event......)
Milestones represent the bringing together of knowing and walking the path, almost like a test, each one is there for a reason, once understood neo moves forward to the next step on his inner journey.
my thoughts why Smith is such a main character then:
In my opinion Neo is totally human and is the anomoly - Smith is a program but is becoming more "humanised" throughout the adventure. The path neo is following is shaping the matrix around himself, this is having the greatest effect on smith. i will try and explain:
I think maybe the part of neo that ws copied or printed onto smith in M1 was neo taking the opportunity to "shed" some "dirty" or evil part human code while destroying smith, (like the part of the code the architect speaks of inherent in every human being).
This could make sense because Neo would actually be taking the opportunity to send this part of the code back to the source with smith.
(The obvious metaphor here is Neo being a hacker)
In effect by the end of of the M1 Neo had taken a step towards the purest kind of thought.
Instead of returning to the source Smith thrived on this new part of the code - combine his original programme single minded, powerfull, destructive, bounty hunter with the human code Neo didn't want (I expect this would include ego, envy, greed) then you have a total meglomaniac.
The reason why Smith his so important is because he is basically Neo's "alter-ego". This idea would work in some ways with Neo not just blasting everything away at the end of M3 (as posted above). If he is able to make an agreement with Smith to end the inprosonment of mankind he is actually "taming" or even winning over this bad side. (metophorically HIS bad side or even the "DARK SIDE" of humanity)
thats the way i look at it anyway - and I love it!
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